Ben Cravatt  Presents Barnett Lectures on Activity-Based Protein Profiling

The Twenty-Sixth Annual Barnett Lectureship
by Roger Kautz, 19 October 2007

(photo gallery)

Dr. Benjamin Cravatt III, Professor in the Skaggs Institute for Chemical Biology and Departments of Cell Biology and Chemistry at the Scripps Research Institute, presented the twenty-sixth annual Barnett Lectureship "Mapping Biochemical Pathways in Human Disease by Integrated Proteomics and Metabolomics". Dr. Cravatt has pioneered the field of Activity-Based Protein Profiling (ABPP) which uses active-site-directed chemical probes to determine the functional states of large numbers of enzymes in the whole proteome.

Many enzymes, such as zymogens, have tightly regulated activities. They are produced by the cell in an inactive "proenzyme" form, later activated within the cell, but then inactivated after a short period. Conventional proteomic methods will detect the presence of the protein throughout this entire span of time; however, it is generally only the active form of the protein that has biological significance.  Dr. Cravatt has developed chemical probes that target only the active form of many enzymes.  Because affinity may in some cases be low, covalent crosslinking tags the active enzyme and survives denaturation and proteolytic cleavage for proteomic analysis.  


Sunny Zhou, Ben Cravatt, Barry Karger

To covalently tag an enzyme using a suicide inhibitor is a familiar a "pre-omics" technology.  In contrast, Dr. Cravatt's development and application of probes that target broad classes of active sites has provided a valuable systems biology tool to monitor the  activity of many related enzymes in a single rapid assay.  Interestingly, enzymes with high affinity for the same ligands typically have lower homology, on the order of 50%;  more closely-related enzymes with high homology generally do not bind the same ligands.

 Dr. Cravatt presented numerous examples from his work.  Tabulating enzyme activities which are either elevated or suppressed in tumors or cancer cell lines has detected known and novel cancer-related enzymes.Integrated with analogous metabolomic methods in discovery metabolite profiling (DMP) Dr. Cravatt's work continues to elucidate the signalling networks and the functions of biochemical pathways in cancer pathogenesis.

The lectures were followed by a reception and dinner in honor of Dr. Cravatt and his accomplishments.   Dr. Cravatt also presented a technical lecture to the Institute the following morning.   


Gavin MacBeath and Alan Saghatelian with  Prof. John R. Engen.  Gavin and Alan were classmates with Ben Cravatt and Sunny Zhou at Scripps; both are currently professors at Harvard  (MacBeath website;   Saghatelian website). Alan recently earned the NIH Director's New Innovator Award.


Guests Cathy Costello and members of her group from Boston University School of Medicine Mass Spectrometry Resource:   Amanuel Kehasse (graduate student), Giuseppe Infusini (postdoctoral fellow) and  David Perlman (research associate).  

 

 


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