Ben Cravatt Presents Barnett Lectures on
Activity-Based Protein Profiling
The Twenty-Sixth Annual Barnett Lectureship
by Roger Kautz, 19 October 2007
(photo gallery)
Dr. Benjamin
Cravatt III, Professor in the Skaggs Institute for
Chemical Biology and Departments of Cell Biology and Chemistry at the Scripps
Research Institute, presented the twenty-sixth annual Barnett Lectureship "Mapping
Biochemical Pathways in Human Disease by Integrated Proteomics and Metabolomics".
Dr. Cravatt has pioneered the field of Activity-Based Protein Profiling (ABPP)
which uses active-site-directed chemical probes to determine the functional
states of large numbers of enzymes in the whole proteome.
Many enzymes, such as zymogens, have tightly regulated
activities. They are produced by the cell in an inactive "proenzyme"
form, later activated within the cell, but then inactivated after a short
period. Conventional proteomic methods will detect the presence of the protein
throughout this entire span of time; however, it is generally only the active form of the protein that has biological significance.
Dr. Cravatt has developed chemical probes that target only the active form of
many enzymes. Because affinity may in some cases be low, covalent crosslinking tags the active enzyme and
survives denaturation and proteolytic cleavage for proteomic analysis.
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Sunny Zhou, Ben Cravatt, Barry Karger
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To covalently tag an enzyme
using a suicide inhibitor is a familiar a "pre-omics"
technology. In contrast, Dr. Cravatt's development and application
of probes that target broad classes of active sites has provided a valuable
systems biology tool to monitor the activity of many related enzymes in a
single rapid assay.
Interestingly, enzymes with high affinity for the same ligands typically have
lower homology, on the order of 50%; more closely-related enzymes with high homology generally do not bind the same
ligands.
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Dr. Cravatt presented numerous examples from his
work. Tabulating enzyme activities which are either elevated or suppressed
in tumors or cancer cell lines has detected known and novel cancer-related
enzymes.Integrated with analogous metabolomic methods in discovery
metabolite profiling (DMP) Dr. Cravatt's work continues to elucidate the
signalling networks and the functions of biochemical pathways in cancer
pathogenesis.
The lectures were followed by a reception and dinner in honor of
Dr. Cravatt and his accomplishments. Dr. Cravatt also presented a
technical lecture to the Institute the following morning.

Gavin MacBeath and Alan Saghatelian with Prof. John R. Engen.
Gavin and Alan were classmates with Ben Cravatt and Sunny Zhou at Scripps; both
are currently professors at Harvard (MacBeath
website; Saghatelian
website). Alan recently earned the NIH Director's New Innovator Award.

Guests Cathy Costello and members of her group from Boston University School of
Medicine Mass
Spectrometry Resource: Amanuel Kehasse (graduate student),
Giuseppe Infusini (postdoctoral fellow) and David Perlman (research
associate).