The Barnett Institute

Research

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  Karger
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Professor William S. Hancock's Research Group

Professor Hancock's research group is directed at the study of disease mechanisms and discovery of potential therapeutic agents by proteomic analysis of biological fluids and tissues samples. This area has been termed clinical proteomics. The proteomic analysis is performed by an approach known as shotgun sequencing in which a sample is digested with a proteolytic enzyme and the resulting complex peptide mixture is separated by HPLC. The identity of the peptide is determined by on-line mass spectrum (ion trap or Fourier transform), using MS/MS fragmentation patterns and accurate mass measurements. The corresponding protein(s) is (are) then identified by searching of genomic and proteomic databases and in a typical analysis of plasma or cerebrospinal fluid several hundred proteins may be identified.
For tissue analysis, individual cells are isolated by laser capture microdissection (LCM) and in an approach known as "direct cell analysis", which can allow the examination of as few as 10,000 cells of a breast cancer cell line. Such an analysis can detect potential disease markers such as breast cancer type 1 and 2 susceptibility protein (BRC1 and 2) and human receptor protein kinase Her-2.
Other programs in clinical proteomics involve the discovery of biomarkers for LCM samples for head and neck cancer, biomarkers for susceptibility of breast and kidney cancer, and biomarkers for pulmonary disease using plasma samples. Several of these programs are joint with Barry Karger.
Finally, new programs have been developed to search for glycosylated proteins in serum as putative markers for a variety of diseases using lectin affinity capture columns. Other diseases of interest include diabetes, psoriasis, rheumatoid arthritis and multiple sclerosis.

Professor Hancock's Research Group Members

Research Associate Professor
Shiaw-Lin (Billy) Wu

Research Assistant Professor
Marina Hincapie

Graduate Students
Tyler Carlage, Haitao Jiang, Majlinda (Linda) Kullolli, Suli Liu, Qiaozhen (Cheryl) Lu, Christina Orazine, Agnes Rafalko, Samnang Tep, Fateme Tousi, Yi Wang, Fangfei Yan, Zhi (Janet) Zeng and Yue Zhang.

photo of Hancock research group
From left: Tyler Carlage, Christine Orazine, Yi Wang, Majlinda Kulloli, Marina Hincapie, William Hancock, Billy Wu, Janet (Zhi) Zheng, Cheryl Lu,
Haitao Jiang
.

Projects

Multi-Lectin Affinity Columns
Peptidomics
Glycoproteomics
Breast Cancer Serum Biomarkers
Cardiovascular Serum Biomarkers
Proteomics of Breast Cancer Cell Lines

Novel LC-MS and Gel LC-MS Plattforms for the Characterization of Therapeutic Monoclonal Antibodies Poster.pdf (Wang, ASMS 2009

Glycoproteome Changes in Breast Cancer: Identification by Multi-lectin Affinity Chromatography (M-LAC) combined with digital Proteomechip^TM (dPC^TM) and Mass Spectrometry Poster.pdf (Zeng, MSB 2009)

Proteomic Analysis of Human Pulmonary Artery Endothelial Cells using nano-LC-MS/MS Poster.ppt (Baker, ASMS 2005)

Last Updated 11/13/2009